Climate change adaptation has yet to be fully incorporated into area-based management tools for conserving biodiversity. One main obstacle is the lack of consensus regarding the inclusion of climate change impacts in spatial conservation plans. We propose a metric-based climate-smart framework that prioritizes the protection of climate refugia. We explore four aspects of climate-smart conservation planning: i) climate model ensembles; ii) emission scenarios; iii) climate metrics; and iv) approaches to identifying climate refugia. We found that all four aspects affected the configuration of spatial plans. The choice of metrics and approaches to identifying refugia greatly affected the resulting climate-smart spatial plans. The choice of climate models and emission scenarios produced smaller effects. We recommend using climate metrics most relevant to the biodiversity and region considered. To account for uncertainty in future climate regimes, we recommend using multiple climate models and emission scenarios. Finally, we show that the approaches used to identify climate refugia exhibit trade-offs between: i) degrees by which they are climate-smart; and ii) efficiency in meeting conservation targets. The choice of approach will depend on the stakeholders' priorities regarding climate adaptation. Our framework can design protected areas that help safeguard biodiversity against current and future climate change.